
These healthy blueberry muffins are a perfect way to enjoy a wholesome treat without sacrificing flavor. Using whole wheat flour and honey instead of refined ingredients makes them both nutritious and delicious. They are great for breakfast or a snack and bring a lovely balance of nutty, fruity, and lightly sweet flavors.
I first baked these on a quiet weekend morning, and soon they became my go to for a quick, nourishing breakfast that keeps me full and energized.
Ingredients
- White whole wheat flour: This flour comes from hard white wheat berries and gives a light color and mild flavor compared to traditional whole wheat. King Arthur brand is reliable, but you can mix whole wheat and allpurpose flour if necessary
- Baking powder and baking soda: These leavening agents create lift and a tender crumb essential for a fluffy muffin
- Kosher salt: Salt is crucial even in sweet recipes to enhance overall flavor and balance sweetness
- Cinnamon: Adds warmth and a subtle spicy note that complements the blueberries and whole wheat richness
- Honey: A natural, unrefined sweetener that also helps keep the muffins moist. Use a quality honey with floral notes if possible
- Unsweetened apple sauce: Adds moisture and tenderness without butter and contributes natural sweetness
- Extra virgin olive oil: A heart healthy fat that lends a fruity, buttery undertone. Choose a smooth and mild variety like Nocellara for baking
- Milk: Any milk works here including plantbased options. Using yogurt is possible but will yield denser muffins
- Egg: Acts as a binder to hold the muffins together and provide structure. Flax egg can be used but expect a less fluffy texture
- Fresh blueberries: Bursting with antioxidants and sweetness. Frozen can substitute but may need longer baking and may color the batter blueish
- Vanilla extract: Enhances the overall flavor and brightness of the muffins
Instructions
- Get ready:
- Preheat your oven to 375 degrees Fahrenheit. Lightly grease a 12 cup muffin pan or line it with paper liners to prevent sticking.
- Mix the dry ingredients:
- In a large bowl, whisk together one and three quarters cups of white whole wheat flour, one teaspoon of baking powder, half a teaspoon of baking soda, half a teaspoon of kosher salt, and one quarter teaspoon of cinnamon. Whisking ensures even distribution of the leavening agents and spices for consistent muffins.
- Mix the wet ingredients:
- In a separate bowl, combine half a cup of honey, half a cup of unsweetened apple sauce, one third cup of extra virgin olive oil, and one quarter cup of milk. Add one large egg and one teaspoon of vanilla extract. Whisk vigorously until the mixture is uniform and smooth.
- Combine:
- Pour the wet ingredients into the dry ingredients. Using a rubber spatula, gently fold the batter just until the ingredients come together. Some lumps are fine, and overmixing will toughen the muffins.
- Fold in the blueberries:
- Stir in one and a half cups of fresh blueberries carefully to avoid smashing them. After adding the blueberries, let the batter rest for twenty minutes. This hydration period gives the whole wheat flour a chance to absorb moisture, improving the texture of the muffins.
- Divide the batter:
- Scoop or pour the batter evenly into the prepared muffin tin, filling each cup about threequarters full.
- Bake:
- Place the pan in the preheated oven and bake for around twentytwo minutes. The muffins are done when a toothpick inserted into the center comes out clean or with a few moist crumbs.
- Cool:
- Allow the muffins to cool in the pan for ten minutes so they set. Then transfer them to a wire rack to cool completely. If any muffins stick, carefully run a butter knife around the edges to loosen them.
- Serve:
- Enjoy these muffins immediately warm or store them in an airtight container at room temperature. Freeze extras for up to three months and thaw on the counter before eating.

These muffins have become a treasured part of my weekend baking routine. The way the whole wheat brings a nutty depth and the juicy blueberries shine through makes each bite a comforting reward. I still remember the first time my family praised them as better than bakery muffins, which felt like a big win.
Storage Tips
Store these muffins in an airtight container at room temperature for up to four days. Keeping them sealed prevents them from drying out while maintaining their soft texture. For longer storage, freeze the muffins in a freezer safe bag or container. They stay good for three months and thaw quickly on the counter, perfect for prepping ahead.
Ingredient Substitutions
If you cannot find white whole wheat flour, a mix of whole wheat and allpurpose flour works well to lighten the texture. Applesauce replaces butter here, but if you prefer you could use melted butter for a richer flavor and slightly denser crumb. Plantbased milk can stand in for dairy milk in the recipe without much difference, making these muffins suitable for vegans if you also substitute the egg with a flax egg. Frozen blueberries are fine but expect a slightly longer baking time and watch for a change in batter color.
Serving Suggestions
These muffins pair wonderfully with a spread of good jam and a drizzle of honey or with fresh fruit on the side. A cup of hot coffee or a fragrant tea makes the perfect companion. For a heartier breakfast, serve alongside Greek yogurt or cottage cheese.

These whole wheat blueberry muffins are an easy, nutritious bake that freezes well for make ahead breakfasts. Enjoy them warm with a drizzle of honey.
Common Questions About Recipes
- → What type of flour is best to use?
White whole wheat flour is recommended for a lighter, less bitter texture while maintaining whole grain nutrition.
- → Can frozen blueberries be used?
Yes, frozen blueberries work fine but may require slightly longer baking time and might tint the batter bluish.
- → Why use applesauce instead of butter?
Unsweetened applesauce adds moisture and natural sweetness while reducing saturated fat content.
- → How should these muffins be stored?
Keep at room temperature in an airtight container up to 4 days or freeze for up to 3 months.
- → What is the role of honey in the batter?
Honey acts as a natural sweetener and humectant, helping retain moisture to keep muffins soft longer.
- → Can other milk types be used?
Any milk works, including plant-based options; Greek yogurt can be used but makes muffins denser.